PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G171500.1
Common NameB456_012G171500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 162aa    MW: 18348.5 Da    PI: 8.8275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G171500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-091359555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +Er RR++++  f +L +llP +    ++K+s  e++ +A+ Y+k+Lq
  Gorai.012G171500.1 13 RCLVERERRKHMKCLFTKLSSLLPIQ----QTKMSVPEMVDQATAYVKELQ 59
                        5679*********************8....7*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-13577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-81063No hitNo description
Gene3DG3DSA:4.10.280.107.8E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-61459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-81464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDNGNGSSMR ISRCLVERER RKHMKCLFTK LSSLLPIQQT KMSVPEMVDQ ATAYVKELQG  60
RLEQHKGTKV QLERTCEMRK RKRMIRPVLN VRDLGYNLEV NLITGLNVEF ALSDFINILQ  120
EEGADILSAT CHHAGDKAIY TILCQVQTMI SMILSVCGTL Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5815023e-54JX581502.1 Gossypium hirsutum clone NBRI_GE14150 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457989.11e-106PREDICTED: transcription factor bHLH125-like
RefseqXP_012457988.11e-106PREDICTED: transcription factor bHLH125-like
TrEMBLA0A0D2V6E71e-117A0A0D2V6E7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.18e-21bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]